/
make_residue_books.pl
executable file
·177 lines (150 loc) · 4.16 KB
/
make_residue_books.pl
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#!/usr/bin/perl
# quick, very dirty little script so that we can put all the
# information for building a residue book set (except the original
# partitioning) in one spec file.
#eg:
# >res0_128_128 interleaved
# haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
# :1 res0_128_128_1.vqd, 4, nonseq cull, 0 +- 1
# :2 res0_128_128_2.vqd, 4, nonseq, 0 +- 1(.7) 2
# :3 res0_128_128_3.vqd, 4, nonseq, 0 +- 1(.7) 3 5
# :4 res0_128_128_4.vqd, 2, nonseq, 0 +- 1(.7) 3 5 8 11
# :5 res0_128_128_5.vqd, 1, nonseq, 0 +- 1 3 5 8 11 14 17 20 24 28 31 35 39
die "Could not open $ARGV[0]: $!" unless open (F,$ARGV[0]);
$goflag=0;
while($line=<F>){
print "#### $line";
if($line=~m/^GO/){
$goflag=1;
next;
}
if($goflag==0){
if($line=~m/\S+/ && !($line=~m/^\#/) ){
my $command=$line;
print ">>> $command";
die "Couldn't shell command.\n\tcommand:$command\n"
if syst($command);
}
next;
}
# >res0_128_128
if($line=~m/^>(\S+)\s+(\S*)/){
# set the output name
$globalname=$1;
$interleave=$2;
next;
}
# haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
if($line=~m/^h(.*)/){
# build a huffman book (no mapping)
my($name,$datafile,$bookname,$interval,$range)=split(' ',$1);
# check the desired subdir to see if the data file exists
if(-e $datafile){
my $command="cp $datafile $bookname.tmp";
print ">>> $command\n";
die "Couldn't access partition data file.\n\tcommand:$command\n"
if syst($command);
my $command="huffbuild $bookname.tmp $interval";
print ">>> $command\n";
die "Couldn't build huffbook.\n\tcommand:$command\n"
if syst($command);
my $command="rm $bookname.tmp";
print ">>> $command\n";
die "Couldn't remove temporary file.\n\tcommand:$command\n"
if syst($command);
}else{
my $command="huffbuild $bookname.tmp 0-$range";
print ">>> $command\n";
die "Couldn't build huffbook.\n\tcommand:$command\n"
if syst($command);
}
next;
}
# :1 res0_128_128_1.vqd, 4, nonseq, 0 +- 1
if($line=~m/^:(.*)/){
my($namedata,$dim,$seqp,$vals)=split(',',$1);
my($name,$datafile)=split(' ',$namedata);
# build value list
my$plusminus="+";
my$list;
my$thlist;
my$count=0;
foreach my$val (split(' ',$vals)){
if($val=~/\-?\+?\d+/){
my$th;
# got an explicit threshhint?
if($val=~/([0-9\.]+)\(([^\)]+)/){
$val=$1;
$th=$2;
}
if($plusminus=~/-/){
$list.="-$val ";
if(defined($th)){
$thlist.="," if(defined($thlist));
$thlist.="-$th";
}
$count++;
}
if($plusminus=~/\+/){
$list.="$val ";
if(defined($th)){
$thlist.="," if(defined($thlist));
$thlist.="$th";
}
$count++;
}
}else{
$plusminus=$val;
}
}
die "Couldn't open temp file $globalname$name.vql: $!" unless
open(G,">$globalname$name.vql");
print G "$count $dim 0 ";
if($seqp=~/non/){
print G "0\n$list\n";
}else{
print G "1\n$list\n";
}
close(G);
my $command="latticebuild $globalname$name.vql > $globalname$name.vqh";
print ">>> $command\n";
die "Couldn't build latticebook.\n\tcommand:$command\n"
if syst($command);
if(-e $datafile){
if($interleave=~/non/){
$restune="res1tune";
}else{
$restune="res0tune";
}
if($seqp=~/cull/){
my $command="$restune $globalname$name.vqh $datafile 1 > temp$$.vqh";
print ">>> $command\n";
die "Couldn't tune latticebook.\n\tcommand:$command\n"
if syst($command);
}else{
my $command="$restune $globalname$name.vqh $datafile > temp$$.vqh";
print ">>> $command\n";
die "Couldn't tune latticebook.\n\tcommand:$command\n"
if syst($command);
}
my $command="mv temp$$.vqh $globalname$name.vqh";
print ">>> $command\n";
die "Couldn't rename latticebook.\n\tcommand:$command\n"
if syst($command);
}else{
print "No matching training file; leaving this codebook untrained.\n";
}
my $command="rm $globalname$name.vql";
print ">>> $command\n";
die "Couldn't remove temp files.\n\tcommand:$command\n"
if syst($command);
next;
}
}
$command="rm -f temp$$.vqd";
print ">>> $command\n";
die "Couldn't remove temp files.\n\tcommand:$command\n"
if syst($command);
sub syst{
system(@_)/256;
}